Strainranking

StrainRanking

 

StrainRanking: Ranking of pathogen strains

Regression-based ranking of pathogen strains with respect to their contributions to natural epidemics, using demographic and genetic data sampled in the curse of the epidemics. Publication: Soubeyrand S., Tollenaere C., Haon-Lasportes E. & Laine A.-L. (2014). Regression-based ranking of pathogen strains with respect to their contributions to natural epidemics. PLOS ONE 9(1): e86591.doi:10.1371/journal.pone.0086591.

Note: The GMCPIC package is embedded in StrainRanking since the 1.2 version.

Version: 1.2
Depends: R (≥ 3.0.0), methods
Published: 2017-11-29
Author: Soubeyrand, S., Tollenaere, C., Haon-Lasportes, E. and Laine, A.-L.
Maintainer: Samuel Soubeyrand <samuel.soubeyrand at inra.fr>
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2.0)]

 

CRAN Link:

http://cran.r-project.org/web/packages/StrainRanking/