FUNYBASE


base de données dédiée à l'analyse et à la classification des protéines homologues extraites des génomes complets fongiques

FUNYBASE is a database dedicated to the analysis of fungal single-copy genes extracted from available fungal genomes sequences, their classification into reliable clusters of orthologs, and the assessment of their informative value for phylogenetic reconstruction based on amino acid sequences. The current release of FUNYBASE contains two types of protein data :

(i) a complete set of protein sequences extracted from 30 public fungal genomes and classified into clusters of orthologs using a robust automated procedure, and

(ii) a subset of 246 reliable ortholog clusters present as single copy genes in 21 fungal genomes. For each of these 246 ortholog clusters, phylogenetic trees were reconstructed based on their amino acid sequences. To assess the informative value of each ortholog cluster, each was compared to a reference species tree constructed using a concatenation of roughly half of the 246 sequences that are best approximated by the WAG evolutionary model.


Informations générales
Partenaire externe
ESE (CNRS/UPSUD) and BIOGER (INRA)
Suivi
Non-maintenu
Informations spécifiques
Langage(s) de développement
Langage(s) d'interface
N° de version courante
V1
Date de la version courante
OS supporté


Porteur(s)
Unité
MaIAGE
Equipe
StatInfOmics
Auteur(s)
Chiapello Hélène
Contact
funybase@inra.fr


 

 

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